Researchers see an unprecedented degree of nerve regeneration using proteomics.


Using proteomics techniques to study injured optic nerves, researchers at Boston Children’s Hospital have identified previously unrecognized proteins and pathways involved in nerve regeneration. The new study showed that adding back one of these proteins, the oncogene c-myc, achieved unprecedented optic nerve regeneration in mice when combined with two other known strategies. The opensource study is published in the journal Neuron.

Researchers have been trying for many decades to get injured nerves in the brain and spinal cord to regenerate. Various molecules have been targeted and found to yield nerve growth, however, previous studies have been hard to replicate. Even with most effective manipulations, the ‘holy grail’ of regenerating a nerve enough for it to resume its function has Ftubeen largely elusive.

The team state that the majority of axons still cannot regenerate which suggests the need to find additional molecules, additional mechanisms. The researchers felt that the proteomics approach filled the gap very well.

Studying mice with optic nerve injury, a classic, easy-to-study type of central nervous system injury the team applied quantitative mass spectrometry to identify and quantify proteins produced by the injured retinal ganglion cells (RGCs), which run from the retina to the brain. The researchers used bioinformatics analyses to compare the protein measurements with those in intact RGCs and looked for patterns indicating proteins that act together in a network.  This approach gave the lab a 30,000-foot view of what pathways are changed in the system as a whole in response to injury. It showed the main pathways to perturb to gain regeneration.

The data finding showed that the pathways matched many that were previously identified, but also included some new players, such as c-myc, TGF-b, NFkb, and Huntingtin, that could lead to a much better understanding of how to recover nerves’ regenerative ability.  The team explain that several pathways must be invoked simultaneously to reach the state of regeneration.

When the researchers induced mice to make more c-myc, optic nerve regeneration was promoted, even when some time had elapsed after the injury. When they combined this approach with deletion of two other molecules known to inhibit regeneration (PTEN and SOCS3), they saw a synergistic effect. The RGCs’ survival was dramatically improved and their axons grew to the optic chiasm (the part of the brain where the optic nerves cross) and beyond, an unprecedented degree of regeneration.

The researchers caution that there is risk in stimulating c-myc (a tumour promoter) and deleting PTEN (a tumour suppressor), as both strategies could also promote cancer, the likely reason that these pathways are shut down once the nervous system has developed. However, there may be ways to mimic these pathways, or ways of stimulating them in a targeted, temporary fashion, the researchers suggest.

The team note that microarray analyses, looking at what genes are transcribed (turned on) in injured nerves, have also been useful in identifying possible nerve regeneration strategies. The problem, state the researchers, is that even when the genes are transcribed, the cell may not actually build the proteins they encode.  By measuring the stage after epigentics, the transcribed proteins, researchers get a more direct, downstream readout of the system.

The group are now testing other proteins they identified through their analysis and are finding some regenerative promise. They are also using proteomics to look for new pathways to target in other neurologic disorders such as Alzheimer’s disease, frontotemporal dementia, spinal muscular atrophy and amyotrophic lateral sclerosis, as well as sensory nerve injury.

Source:  Boston Children’s Hospital

 

This figure shows the cellular and functional distribution of identified and quantified proteins according to the GO annotation. An entire Ingenuity  Pathway  Analysis  signaling  and  interaction  network  output  of  identified  and  quantified proteins is provided.  Injury-Induced Decline of Intrinsic Regenerative Ability Revealed by Quantitative Proteomics.  Steen et al 2015.

This figure shows the cellular and functional distribution of identified and quantified proteins according to the GO annotation. An entire Ingenuity
Pathway Analysis signaling and interaction network output of identified and quantified proteins is provided. Injury-Induced Decline of Intrinsic Regenerative Ability Revealed by Quantitative Proteomics. Steen et al 2015.

 

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